Index

_ | A | B | C | D | F | G | H | I | L | M | N | O | P | R | S | T | V | X

_

_index (HPOTerm attribute)

A

all_genes() (pyhpo.set.HPOSet method)
all_parents (HPOTerm attribute)

B

BasicHPOSet (class in pyhpo.set)

C

child_nodes() (pyhpo.set.HPOSet method)
child_of() (pyhpo.term.HPOTerm method)
children (HPOTerm attribute)
combinations() (pyhpo.set.HPOSet method)
combinations_one_way() (pyhpo.set.HPOSet method)
comment (HPOTerm attribute)
common_ancestors() (pyhpo.term.HPOTerm method)
count_parents() (pyhpo.term.HPOTerm method)

D

decipher_diseases (HPOTerm attribute)
definition (HPOTerm attribute)

F

from_queries() (pyhpo.set.HPOSet class method)
from_serialized() (pyhpo.set.HPOSet class method)

G

genes (HPOTerm attribute)
(OntologyClass attribute)
GeneSingleton (class in pyhpo.annotations)
get_hpo_object() (pyhpo.ontology.OntologyClass method)

H

hierarchy() (pyhpo.term.HPOTerm method)
HPO_Gene (class in pyhpo.annotations)
HPOSet (class in pyhpo.set)
HPOTerm (class in pyhpo.term)

I

id (GeneSingleton attribute)
(HPOTerm attribute)
id_from_string() (pyhpo.term.HPOTerm static method)
information_content (HPOTerm attribute)
information_content() (pyhpo.set.HPOSet method)
is_a (HPOTerm attribute)
is_modifier (HPOTerm attribute)
is_obsolete (HPOTerm attribute)

L

longest_path_to_bottom() (pyhpo.term.HPOTerm method)
longest_path_to_root() (pyhpo.term.HPOTerm method)

M

match() (pyhpo.ontology.OntologyClass method)

N

name (GeneSingleton attribute)
(HPOTerm attribute)

O

omim_diseases (HPOTerm attribute)
(OntologyClass attribute)
omim_diseases() (pyhpo.set.HPOSet method)
omim_excluded_diseases (HPOTerm attribute)
(OntologyClass attribute)
OmimDisease (class in pyhpo.annotations)
OntologyClass (class in pyhpo.ontology)
orpha_diseases (HPOTerm attribute)

P

parent_ids() (pyhpo.term.HPOTerm method)
parent_of() (pyhpo.term.HPOTerm method)
parents (HPOTerm attribute)
parse_pheno_file() (in module pyhpo.annotations)
parse_synonym() (pyhpo.term.HPOTerm static method)
path() (pyhpo.ontology.OntologyClass method)
path_to_other() (pyhpo.term.HPOTerm method)
print_hierarchy() (pyhpo.term.HPOTerm method)

R

remove_modifier() (pyhpo.set.HPOSet method)
remove_outcommented_rows() (in module pyhpo.annotations)
replace_obsolete() (pyhpo.set.HPOSet method)
replaced_by (HPOTerm attribute)

S

search() (pyhpo.ontology.OntologyClass method)
serialize() (pyhpo.set.HPOSet method)
shortest_path_to_parent() (pyhpo.term.HPOTerm method)
shortest_path_to_root() (pyhpo.term.HPOTerm method)
similarity() (pyhpo.set.HPOSet method)
similarity_score() (pyhpo.term.HPOTerm method)
symbol (GeneSingleton attribute)
synonym (HPOTerm attribute)
synonym_match() (pyhpo.ontology.OntologyClass method)
synonym_search() (pyhpo.ontology.OntologyClass method)

T

to_dataframe() (pyhpo.ontology.OntologyClass method)
toJSON() (pyhpo.set.HPOSet method)
(pyhpo.term.HPOTerm method)

V

variance() (pyhpo.set.HPOSet method)

X

xref (HPOTerm attribute)