PyHPO
2.7.1
API documentation:
HPOTerm
Ontology
Annotations
HPOSet
Statistics
Matrix
Handling master data
PyHPO
»
Index
Index
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A
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B
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C
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D
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E
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F
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G
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H
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I
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L
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M
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N
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O
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P
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R
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S
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T
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V
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X
_
_index (pyhpo.term.HPOTerm attribute)
A
all_genes() (pyhpo.set.HPOSet method)
all_parents (pyhpo.term.HPOTerm attribute)
B
BasicHPOSet (class in pyhpo.set)
C
child_nodes() (pyhpo.set.HPOSet method)
child_of() (pyhpo.term.HPOTerm method)
children (pyhpo.term.HPOTerm attribute)
columns (pyhpo.matrix.Matrix attribute)
combinations() (pyhpo.set.HPOSet method)
combinations_one_way() (pyhpo.set.HPOSet method)
comment (pyhpo.term.HPOTerm attribute)
common_ancestors() (pyhpo.term.HPOTerm method)
count_parents() (pyhpo.term.HPOTerm method)
D
decipher_diseases (pyhpo.term.HPOTerm attribute)
definition (pyhpo.term.HPOTerm attribute)
DiseaseDict (class in pyhpo.annotations)
DiseaseSingleton (class in pyhpo.annotations)
E
enrichment() (pyhpo.stats.EnrichmentModel method)
(pyhpo.stats.HPOEnrichment method)
EnrichmentModel (class in pyhpo.stats)
F
from_queries() (pyhpo.set.HPOSet class method)
from_serialized() (pyhpo.set.HPOSet class method)
G
GeneDict (class in pyhpo.annotations)
genes (pyhpo.ontology.OntologyClass attribute)
(pyhpo.term.HPOTerm attribute)
GeneSingleton (class in pyhpo.annotations)
get_hpo_object() (pyhpo.ontology.OntologyClass method)
H
hierarchy() (pyhpo.term.HPOTerm method)
hpo (pyhpo.annotations.DiseaseSingleton attribute)
(pyhpo.annotations.GeneSingleton attribute)
HPO_Gene (class in pyhpo.annotations)
HPOEnrichment (class in pyhpo.stats)
HPOSet (class in pyhpo.set)
HPOTerm (class in pyhpo.term)
I
id (pyhpo.annotations.DiseaseSingleton attribute)
(pyhpo.annotations.GeneSingleton attribute)
(pyhpo.term.HPOTerm attribute)
id_from_string() (pyhpo.term.HPOTerm static method)
information_content (pyhpo.term.HPOTerm attribute)
information_content() (pyhpo.set.HPOSet method)
is_a (pyhpo.term.HPOTerm attribute)
is_modifier (pyhpo.term.HPOTerm attribute)
is_obsolete (pyhpo.term.HPOTerm attribute)
L
longest_path_to_bottom() (pyhpo.term.HPOTerm method)
longest_path_to_root() (pyhpo.term.HPOTerm method)
M
match() (pyhpo.ontology.OntologyClass method)
Matrix (class in pyhpo.matrix)
N
n_cols (pyhpo.matrix.Matrix attribute)
n_rows (pyhpo.matrix.Matrix attribute)
name (pyhpo.annotations.DiseaseSingleton attribute)
(pyhpo.annotations.GeneSingleton attribute)
(pyhpo.term.HPOTerm attribute)
O
omim_diseases (pyhpo.ontology.OntologyClass attribute)
(pyhpo.term.HPOTerm attribute)
omim_diseases() (pyhpo.set.HPOSet method)
omim_excluded_diseases (pyhpo.ontology.OntologyClass attribute)
(pyhpo.term.HPOTerm attribute)
OntologyClass (class in pyhpo.ontology)
orpha_diseases (pyhpo.term.HPOTerm attribute)
P
parent_ids() (pyhpo.term.HPOTerm method)
parent_of() (pyhpo.term.HPOTerm method)
parents (pyhpo.term.HPOTerm attribute)
parse_pheno_file() (in module pyhpo.annotations)
parse_synonym() (pyhpo.term.HPOTerm static method)
path() (pyhpo.ontology.OntologyClass method)
path_to_other() (pyhpo.term.HPOTerm method)
print_hierarchy() (pyhpo.term.HPOTerm method)
R
remove_modifier() (pyhpo.set.HPOSet method)
remove_outcommented_rows() (in module pyhpo.annotations)
replace_obsolete() (pyhpo.set.HPOSet method)
replaced_by (pyhpo.term.HPOTerm attribute)
rows (pyhpo.matrix.Matrix attribute)
S
search() (pyhpo.ontology.OntologyClass method)
serialize() (pyhpo.set.HPOSet method)
shortest_path_to_parent() (pyhpo.term.HPOTerm method)
shortest_path_to_root() (pyhpo.term.HPOTerm method)
similarity() (pyhpo.set.HPOSet method)
similarity_score() (pyhpo.term.HPOTerm method)
symbol (pyhpo.annotations.GeneSingleton attribute)
synonym (pyhpo.term.HPOTerm attribute)
synonym_match() (pyhpo.ontology.OntologyClass method)
synonym_search() (pyhpo.ontology.OntologyClass method)
T
to_dataframe() (pyhpo.ontology.OntologyClass method)
toJSON() (pyhpo.annotations.DiseaseSingleton method)
(pyhpo.annotations.GeneSingleton method)
(pyhpo.set.HPOSet method)
(pyhpo.term.HPOTerm method)
V
variance() (pyhpo.set.HPOSet method)
X
xref (pyhpo.term.HPOTerm attribute)