Index

_

_index (HPOTerm attribute)

A

all_genes() (pyhpo.set.HPOSet method)

all_parents (HPOTerm attribute)

B

BasicHPOSet (class in pyhpo.set)

C

child_nodes() (pyhpo.set.HPOSet method) child_of() (pyhpo.term.HPOTerm method) children (HPOTerm attribute) combinations() (pyhpo.set.HPOSet method)

combinations_one_way() (pyhpo.set.HPOSet method) comment (HPOTerm attribute) common_ancestors() (pyhpo.term.HPOTerm method) count_parents() (pyhpo.term.HPOTerm method)

D

decipher_diseases (HPOTerm attribute)

definition (HPOTerm attribute)

F

from_queries() (pyhpo.set.HPOSet class method)

from_serialized() (pyhpo.set.HPOSet class method)

G

genes (HPOTerm attribute) (OntologyClass attribute) GeneSingleton (class in pyhpo.annotations)

get_hpo_object() (pyhpo.ontology.OntologyClass method)

H

hierarchy() (pyhpo.term.HPOTerm method) HPO_Gene (class in pyhpo.annotations)

HPOSet (class in pyhpo.set) HPOTerm (class in pyhpo.term)

I

id (GeneSingleton attribute) (HPOTerm attribute) id_from_string() (pyhpo.term.HPOTerm static method) information_content (HPOTerm attribute) information_content() (pyhpo.set.HPOSet method)

is_a (HPOTerm attribute) is_modifier (HPOTerm attribute) is_obsolete (HPOTerm attribute)

L

longest_path_to_bottom() (pyhpo.term.HPOTerm method)

longest_path_to_root() (pyhpo.term.HPOTerm method)

M

match() (pyhpo.ontology.OntologyClass method)

N

name (GeneSingleton attribute) (HPOTerm attribute)

O

omim_diseases (HPOTerm attribute) (OntologyClass attribute) omim_diseases() (pyhpo.set.HPOSet method) omim_excluded_diseases (HPOTerm attribute) (OntologyClass attribute)

OmimDisease (class in pyhpo.annotations) OntologyClass (class in pyhpo.ontology) orpha_diseases (HPOTerm attribute)

P

parent_ids() (pyhpo.term.HPOTerm method) parent_of() (pyhpo.term.HPOTerm method) parents (HPOTerm attribute) parse_pheno_file() (in module pyhpo.annotations)

parse_synonym() (pyhpo.term.HPOTerm static method) path() (pyhpo.ontology.OntologyClass method) path_to_other() (pyhpo.term.HPOTerm method) print_hierarchy() (pyhpo.term.HPOTerm method)

R

remove_modifier() (pyhpo.set.HPOSet method) remove_outcommented_rows() (in module pyhpo.annotations)

replace_obsolete() (pyhpo.set.HPOSet method) replaced_by (HPOTerm attribute)

S

search() (pyhpo.ontology.OntologyClass method) serialize() (pyhpo.set.HPOSet method) shortest_path_to_parent() (pyhpo.term.HPOTerm method) shortest_path_to_root() (pyhpo.term.HPOTerm method) similarity() (pyhpo.set.HPOSet method)

similarity_score() (pyhpo.term.HPOTerm method) symbol (GeneSingleton attribute) synonym (HPOTerm attribute) synonym_match() (pyhpo.ontology.OntologyClass method) synonym_search() (pyhpo.ontology.OntologyClass method)

T

to_dataframe() (pyhpo.ontology.OntologyClass method)

toJSON() (pyhpo.set.HPOSet method) (pyhpo.term.HPOTerm method)

V

variance() (pyhpo.set.HPOSet method)

X

xref (HPOTerm attribute)